PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00013919-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family MYB_related
Protein Properties Length: 92aa    MW: 10392.9 Da    PI: 9.3517
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00013919-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.52.7e-171462148
                        TSSS-HHHHHHHHHHHHHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48
                        +g+W++eEd  l+d+ +++G+g +W + +++ g++R++k+c++rw++yl
  WALNUT_00013919-RA 14 KGPWSPEEDATLKDYLEKHGTGgNWIALPHKAGLKRCGKSCRLRWLNYL 62
                        79**********************************************7 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129420.335966IPR017930Myb domain
Gene3DG3DSA:1.10.10.607.8E-211261IPR009057Homeodomain-like
SMARTSM007173.3E-121364IPR001005SANT/Myb domain
PfamPF002493.4E-161462IPR001005SANT/Myb domain
SuperFamilySSF466895.9E-201589IPR009057Homeodomain-like
CDDcd001673.95E-91662No hitNo description
Gene3DG3DSA:1.10.10.604.5E-76287IPR009057Homeodomain-like
PROSITE profilePS500904.0546392IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 92 aa     Download sequence    Send to blast
MGRAPCCDKA NVKKGPWSPE EDATLKDYLE KHGTGGNWIA LPHKAGLKRC GKSCRLRWLN  60
YLRPDIRRGS FTEEEDKIIC TLYGSIGSRQ VN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A5e-151489780B-MYB
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002309524.12e-56hypothetical protein POPTR_0006s25060g
RefseqXP_011015974.12e-56PREDICTED: transcription factor RAX2-like
RefseqXP_011019548.12e-56PREDICTED: transcription factor RAX2-like
RefseqXP_015573108.13e-56PREDICTED: transcription factor RAX2 isoform X1
SwissprotQ9SJL73e-54RAX2_ARATH; Transcription factor RAX2
TrEMBLB9HE032e-56B9HE03_POPTR; Uncharacterized protein
STRINGPOPTR_0006s25060.16e-56(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13034340
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36890.11e-55MYB family protein